Creation of a reference population and development of methods for estimating genomic breeding values of pig traits included into the Czech National Breeding Program

Project no. QK1910217
Category PROJEKTY NAZV / National Agency for Agricultural Research PROJECTS
ProviderMZE ČR
Description

The aim of the present project is to create a reference population of animals needed for a reliable estimation of genomic breeding values (GEPH) of traits. Subsequently, to develop a complex system, methods and computer programs for the evaluation of molecular-genetic markers and to determine the GEPH for population of pigs included into the Czech National Breeding Program. Another objective is to evaluate the genetic variability of population based on molecular-genetic information and the possibility to apply the genomic selection for health and meat quality traits of pigs.

Period2019 - 2023
Databse link (CZ)

TitleYear
CALTA, Jan, ŽÁKOVÁ, Eliška, KRUPA, Emil, ČÍTEK, Jaroslav, DVOŘÁKOVÁ MACHOVÁ, Karolína, TICHÝ, Ladislav, STIBAL, Jan and VOSTRÝ, Luboš. Selecting an appropriate statistical model for estimating genetic parameters: A case study of pig maternal breeds in Czechia. Livestock Science, 2024, 283, Article Number: 105457. ISSN 1871-1413. 2024
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil, STIBAL, J. a ZAVADILOVÁ, Ludmila., 2023 Administration of medicines and performance of sows based on farm data. In Book of Abstracts of the 1st Regional Meeting of the European Federation of Animal Science. Nitra, Slovakia: Slovak University of Agriculture in Nitra, Slovakia, s. 79. ISSN 2023
KRUPA, Emila, KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, BAUER, Jiří, MORAVČÍKOVÁ, Nina and VRTKOVÁ, Irena. An Assessment of the Genetic Parameters of Boars’ Reproductive Traits. Genes, 2023, 14, Article number: 2003. ISSN 2073-4425. 2023
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil, STIBAL, J. a ZAVADILOVÁ, Ludmila., 2023 Application of drugs and productivity of sows according to farm records and PT. In Pokroky v chovu a šlechtění prasat v rámci programu CzePig. online: CzePig, s. Prezentace 1-6. ISSN 2023
CALTA, Jan, ŽÁKOVÁ, Eliška, KRUPA, Emil, MÉSZÁROS, Gábor a VOSTRÝ, Luboš., 2023 Comparison of conventional BLUP and single-step GBLUP under the linear regression method in Czech pig breeds. In Book of Abstracts of the 31st Symposium Animal Science Days. Ljubljana, Slovenia: University of Ljubljana, Biotechnical Faculty, s. 67. ISSN 2023
KRUPA, Emil, KRUPOVÁ, Zuzana; ŽÁKOVÁ, Eliška, MORAVČÍKOVÁ, N. a VRTKOVÁ, I. ., 2023 Diversity of pig breeds reared in the Czech Republic. In Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science. Wageningen, The Netherlands: Wageningen Academic Publishers, s. 212. ISSN 2023
MORAVČÍKOVÁ, N., KASARDA, R., HUSTINOVÁ, M., KRUPA, Emil, KRUPOVÁ, Zuzana a ŽÁKOVÁ, Eliška., 2023 Genomic differences between the domesticated pig breed and its ancestor wild boar. In Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science. Wageningen, The Netherlands: Wageningen Academic Publishers, s. 394. ISSN 2023
KRUPA, Emil, ŽÁKOVÁ, Eliška, KRUPOVÁ, Zuzana, STIBAL, J. a MORAVČÍKOVÁ, Nina., 2023 Genomic selection of pigs in Czech Republic. In Book of Abstracts of the 1st Regional Meeting of the European Federation of Animal Science. Nitra, Slovakia: Slovak University of Agriculture in Nitra, Slovakia, s. 34. ISSN 2023
KRUPA, Emil, ŽÁKOVÁ, Eliška, KRUPOVÁ, Zuzana, MORAVČÍKOVÁ, Nina a BAUER, Jiří., 2023 Genomic selection of pigs in Czech Republic and Economic weights. In Genetic evaluation and breeding of farm animals in the Czech Republic. Hradištko: ČMSCH, a.s., s. Prezentace 1-13. ISSN 2023
KRUPA, Emil, ŽÁKOVÁ, Eliška, KRUPOVÁ, Zuzana, MORAVČÍKOVÁ, Nina a BAUER, Jiří., 2023 Genomic evaluation of pigs - sperm quality. In Pokroky v chovu a šlechtění prasat v rámci programu CzePig. online: CzePig, s. Prezentace 1-17. ISSN 2023
VÝZKUMNÝ ÚSTAV ŽIVOČIŠNÉ VÝROBY, v.v.i. V UHŘÍNĚVSI. Estimation of genomic breeding values for sperm quality traits and libido in boars. Authors: KRUPA, Emil, ŽÁKOVÁ, Eliška, KRUPOVÁ, Zuzana and BAUER, Jiří.. Praha Uhříněves. Certifikovaná metodika 978-80-7403-295-0. 2023-08-22. 2023
ŽÁKOVÁ, Eliška, KRUPOVÁ, Zuzana; KRUPA, Emil, STIBAL, J. a VRTKOVÁ, I. ., 2023 Parentage control of pigs based on SNP data. In Book of Abstracts of the 74th Annual Meeting of the European Federation of Animal Science. Wageningen, The Netherlands: Wageningen Academic Publishers, s. 214. ISSN 2023
KRUPOVÁ, Zuzana., 2022 Bioeconomic models and their aplication in Czech breeding. In Věda o hospodářských zvířatech v Čechách a na Moravě . Praha Uhříněves: Výzkumný ústav živočišné výroby, v. v. i., s. 4. ISSN 2022
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil, PŘIBYL, Josef a ZAVADILOVÁ, Ludmila., 2022 Genetic parameters of traits for updating the Reproductive index. In Genetická konference GSGM 2022, XXIX. Genetické dny. Brno: KONVOJ, spol. s r.o., Brno 2022, s. 17. ISSN 2022
VÝZKUMNÝ ÚSTAV ŽIVOČIŠNÉ VÝROBY, v.v.i. V UHŘÍNĚVSI. Assessment of the pig relationship using the SNP data. Authors: ŽÁKOVÁ, Eliška, KRUPA, Emil and KRUPOVÁ, Zuzana.. Česká republika. Certifikovaná metodika 978-80-7403-278-3. 2022-11-22. 2022
KRUPOVÁ, Zuzana, KRUPA, Emil, ŽÁKOVÁ, Eliška, ZAVADILOVÁ, Ludmila a KAŠNÁ, Eva., 2022 New reproduction index in selection of dam pig population. In Book of Abstracts of the 73rd Annual Meeting of the European Federation of Animal Science. Wageningen, The Netherlands: Wageningen Academic Publishers, s. 714. ISSN 2022
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil and ZAVADILOVÁ, Ludmila. New criteria in the breeding of sire pig breeds. Náš chov, 2022, vol. 82(1), p. 52-55. ISSN 0027-8068. 2022
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil, PŘIBYL, Josef and ZAVADILOVÁ, Ludmila. New reproductive index of dam pig breeds. Náš chov, 2022, vol. 82(7), p. 28-31. ISSN 0027-8068. 2022
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil, ZAVADILOVÁ, Ludmila and MORAVČÍKOVÁ, Nina. Selection of dam breeds under stable and declined conditions. Acta Fytotechnica et Zootechnica, 2022, 25, 203-210. ISSN 1336-9245. 2022
KRUPA, Emil, ŽÁKOVÁ, Eliška, KRUPOVÁ, Zuzana, VRTKOVÁ, Irena a MORAVČÍKOVÁ, Nina.., 2022 Evaluation of pigs inbreeding. In Věda o hospodářských zvířatech v Čechách a na Moravě . Praha Uhříněves: Výzkumný ústav živočišné výroby, v. v. i., s. 42-47. ISSN 2022
KRUPA, Emil, MORAVČÍKOVÁ, Nina, KRUPOVÁ, Zuzana and ŽÁKOVÁ, Eliška. Assessment of the Genetic Diversity of a Local Pig Breed Using Pedigree and SNP Data. Genes, 2021, 12, 1972. ISSN 2073-4425. 2021
KRUPOVÁ, Zuzana, KRUPA, Emil, ŽÁKOVÁ, Eliška, ZAVADILOVÁ, Ludmila and KAŠNÁ, Eva. Candidate genes for congenital malformations in pigs. Acta Fytotechnica et Zootechnica, 2021, 24, 309-314. ISSN 1336-9245. 2021
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška a KRUPA, Emil., 2021 CPH dam pig breeds. In RPK, Velký Rybník. Praha: SCHP a VÚŽV, v.v.i., s. 1-6. ISSN 2021
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška a KRUPA, Emil., 2021 CPH sire pig breeds. In RPK. Praha: SCHP a VÚŽV, v.v.i., s. 1-8. ISSN 2021
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil and ZAVADILOVÁ, Ludmila. Phenotypic and genetic trends of pig traits in the CzePig program. Náš chov, 2021, vol. 81(11), p. 23-26. ISSN 0027-8068. 2021
VÝZKUMNÝ ÚSTAV ŽIVOČIŠNÉ VÝROBY, v.v.i. V UHŘÍNĚVSI. Genetic groups of the dam pig breeds. Authors: ŽÁKOVÁ, Eliška, VOSTRÝ, Luboš, KRUPOVÁ, Zuzana and KRUPA, Emil.. Česká republika. Certifikovaná metodika 978-80-7403-260-8. 2021-11-30. 2021
KRUPOVÁ, Zuzana, KRUPA, Emil, ŽÁKOVÁ, Eliška, WOLFOVÁ, Marie a PŘIBYL, Josef., 2021 New functional traits in selection of the Czech dam pig breeds. In Book of Abstracts of the 72nd Annual Meeting of the European Federation of Animal Science. Wageningen, The Netherlands: Wageningen Academic Publishers, s. 256. ISSN 2021
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil a PŘIBYL, Josef., 2021 New traits for selection in the Czech sire pig breeds. In 29th Animal Science Days International Symposium. Gödöllö - Hungary: Hungarian University of Agriculture and Life Sciences, s. 55. ISSN 2021
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil and ZAVADILOVÁ, Ludmila. New criteria in the breeding of dam pig breeds. Náš chov, 2021, vol. 81(12), p. 26-29. ISSN 0027-8068. 2021
VÝZKUMNÝ ÚSTAV ŽIVOČIŠNÉ VÝROBY, v.v.i. V UHŘÍNĚVSI. Selection indices of pigs with new functional traits. Authors: KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška, KRUPA, Emil and PŘIBYL, Josef.. Česká republika. Certifikovaná metodika 978-80-7403-253-0. 2021-08-31. 2021
KRUPOVÁ, Zuzana, KRUPA, Emil, ZAVADILOVÁ, Ludmila, KAŠNÁ, Eva and ŽÁKOVÁ, Eliška. Current challenges for trait economic values in animal breeding. Czech Journal of Animal Science, 2020, 65, 454-462. ISSN 1212-1819. 2020
KRUPOVÁ, Zuzana, WOLFOVÁ, Marie, KRUPA, Emil a ŽÁKOVÁ, Eliška., 2020 Economic importance of the number of functional teats in the Czech pig breeds. In Book of Abstracts of the 71st Annual Meeting of the European Federation of Animal Science. Wageningen: Wageningen Academic, s. 383. ISSN 2020
KRUPOVÁ, Zuzana, KRUPA, Emil, ŽÁKOVÁ, Eliška and WOLFOVÁ, Marie. Economic weights of new fertility traits of sows and boars.. Náš chov, 2020, vol. 80(5), p. 46-50. ISSN 0027-8068. 2020
KRUPOVÁ, Zuzana, KRUPA, Emil, ŽÁKOVÁ, Eliška and WOLFOVÁ, Marie. Economic values of traits in four-breed production systém. Náš chov, 2020, vol. 80(8), p. 28-31. ISSN 0027-8068. 2020
KRUPA, Emil, WOLFOVÁ, Marie, KRUPOVÁ, Zuzana and ŽÁKOVÁ, Eliška. Estimation of economic weights for number of teats and sperm quality traits in pigs. Journal of Animal Breeding and Genetics, 2020, 137, 189-199. ISSN 0931-2668. 2020
ŽÁKOVÁ, Eliška, KRUPOVÁ, Zuzana and KRUPA, Emil. Genetics of feed intake traits in the Czech Large White pig population. Acta Fytotechnica et Zootechnica, 2020, 23, 217+223. ISSN 1336-9245. 2020
VÝZKUMNÝ ÚSTAV ŽIVOČIŠNÉ VÝROBY, v.v.i. V UHŘÍNĚVSI. System of collection and storage of health data in the performance testing of pigs. Authors: ŽÁKOVÁ, Eliška, KRUPOVÁ, Zuzana and KRUPA, Emil.. Česká republika. Certifikovaná matodika 978-80-7403-230-1. 2020-04-21. 2020
KRUPOVÁ, Zuzana, ŽÁKOVÁ, Eliška and KRUPA, Emil. Application of medicines and production and reproduction parameters of sows. Náš chov, 2019, vol. 79(12), p. 55-59. ISSN 0027-8068. 2019
KRUPOVÁ, Zuzana, KRUPA, Emil, WOLFOVÁ, Marie, PŘIBYL, Josef a ZAVADILOVÁ, Ludmila., 2019 Economic weights of sperm quality traits for sire breed using the gene flow methods. In Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science. Wageningen: EAAP, s. 486. ISSN 2019
KRUPA, Emil, SCHRÖFFELOVÁ, Daniela, ŽÁKOVÁ, Eliška, NĚMCOVÁ, Lucie, KRUPOVÁ, Zuzana and VRTKOVÁ, Irena. Possibilities of collecting, analyzing and managing a SNP data.. Náš chov, 2019, vol. 79(11), p. 31-34. ISSN 0027-8068. 2019
KRUPA, Emil, ŽÁKOVÁ, Eliška and KRUPOVÁ, Zuzana. Evaluation of genetic variability of the Přeštice Black Pied breed. Chovatelské listy, 2019, vol. 2019(1), p. 36-37. ISSN . 2019

ALL PUBLICATIONS

Possibilities of collecting, analyzing and managing a SNP data.
Application of medicines and production and reproduction parameters of sows
Economic weights of sperm quality traits for sire breed using the gene flow methods
Evaluation of genetic variability of the Přeštice Black Pied breed
Estimation of economic weights for number of teats and sperm quality traits in pigs
Economic weights of new fertility traits of sows and boars.
System of collection and storage of health data in the performance testing of pigs
Economic values of traits in four-breed production systém
Genetics of feed intake traits in the Czech Large White pig population
Economic importance of the number of functional teats in the Czech pig breeds
Current challenges for trait economic values in animal breeding
Selection indices of pigs with new functional traits
New functional traits in selection of the Czech dam pig breeds
New traits for selection in the Czech sire pig breeds
Phenotypic and genetic trends of pig traits in the CzePig program
New criteria in the breeding of dam pig breeds
Assessment of the Genetic Diversity of a Local Pig Breed Using Pedigree and SNP Data
Genetic groups of the dam pig breeds
Candidate genes for congenital malformations in pigs
CPH dam pig breeds
CPH sire pig breeds
New criteria in the breeding of sire pig breeds
New reproductive index of dam pig breeds
New reproduction index in selection of dam pig population
Genetic parameters of traits for updating the Reproductive index
Selection of dam breeds under stable and declined conditions
Assessment of the pig relationship using the SNP data
Bioeconomic models and their aplication in Czech breeding
Evaluation of pigs inbreeding
Genomic selection of pigs in Czech Republic
Administration of medicines and performance of sows based on farm data
Genomic differences between the domesticated pig breed and its ancestor wild boar
Parentage control of pigs based on SNP data
Diversity of pig breeds reared in the Czech Republic
Estimation of genomic breeding values for sperm quality traits and libido in boars
Comparison of conventional BLUP and single-step GBLUP under the linear regression method in Czech pig breeds
An Assessment of the Genetic Parameters of Boars’ Reproductive Traits
Application of drugs and productivity of sows according to farm records and PT
Genomic evaluation of pigs - sperm quality
Genomic selection of pigs in Czech Republic and Economic weights
Selecting an appropriate statistical model for estimating genetic parameters: A case study of pig maternal breeds in Czechia